Workflow Nodes

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27 Workflow Nodes visible to you, out of a total of 30

Sink refers to the collection of chemical species used by the restrosynthesis algorithm of RetroPath2.0 to finish metabolic route exploration. This tool uses an SBML file of the desired chassis organism, parses all the molecules within a specified compartment (example: cytoplasm, Golgi apparatus, nucleus, etc) and uses its MIRIAM annotation to find their InChI structures. You can use "Remove dead-end metabolites using FVA evaluation? to conduct Flux Variability Analysis to remove metabolites that
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Creator: Melchior du Lac

Contributor: Melchior du Lac

Tool that parses a GEM SBML model and outputs a JSON with the taxonomy ID of the model

Creator: Melchior du Lac

Contributor: Melchior du Lac

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