Workflow Nodes

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27 Workflow Nodes visible to you, out of a total of 30

This tool allows for the design and optimization of novel, reusable synthetic biology parts. For each enzyme predicted, it recovers the DNA sequence from the UNIPROT ID, runs a codon optimization protocol, and adds various strength calculated RBS (ribosome binding site) to it.

Creator: Melchior du Lac

Contributor: Melchior du Lac

This tool provides a graphical output of the heterologous pathway and the calculated pathway characteristics.

Creator: Melchior du Lac

Contributor: Melchior du Lac

This tool takes for input the outputs of both RetroPath2.0 and RP2paths and generates a series of SBML files with mono-component reactions. Since more than one reaction rule may be associated with a single reaction, the best scoring reaction steps are considered before combining them to individual pathways. The number of combinations is controlled by the "Max reaction rules per reaction" parameter in the Advanced Options. The default value is 2, with a minimum of 1 with no maximum. A higher substep
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Creator: Melchior du Lac

Contributor: Melchior du Lac

Estimate & Scale-up cost of process equipment
Link: https://costing.ipsen.ntua.gr/

Creators: Konstantinos Pyrgakis, ANTONIS KOKOSSIS, Melina Psycha - NTUA

Contributor: Konstantinos Pyrgakis

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