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Cell:
Value:
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AmpliconAssay
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DNAseqAssay
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# Package | Structured comment name | Requirement | Value syntax | Example | Preferred unit | URL | Definition | ||
core | ProjectIdentifier | M | {text} | ProjectX | http://schema.org/identifier | Identifier corresponding to the project | |||
core | ProjectTitle | M | {text} | The title describing project X | http://schema.org/title | Title describing the project | |||
core | ProjectDescription | M | {text} | A longer description that explains what project X is all about. | http://schema.org/description | Description of the project | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | Preferred unit | URL | Definition | ||
core | InvestigationIdentifier | M | {text} | InvestigationID | http://schema.org/identifier | Identifier corresponding to the investigation | |||
core | InvestigationTitle | M | {text} | Title about the investigation | http://schema.org/title | Title describing the investigation | |||
core | InvestigationDescription | M | {text} | Description of the investigation | http://schema.org/description | Description of the investigation | |||
core | FirstName | M | {text} | Jane | http://schema.org/givenName | The given name of a person | |||
core | LastName | M | {text} | Doe | http://schema.org/familyName | The family name of a person | |||
core | M | {text} | jane.doe@wur.nl | http://schema.org/email | The email address of a person | ||||
core | ORCID | M | {integer} | 123456789 | The orcid of a given person | ||||
core | Organization | M | {text} | Wageningen | http://schema.org/memberOf | Member of an organization | |||
core | Department | M | {text} | Laboratory of Systems and Synthetic Biology | http://schema.org/department | The department this person belongs to | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | Preferred unit | URL | Definition | ||
core | StudyIdentifier | M | {text} | StudyX | http://schema.org/identifier | Identifier corresponding to the study | |||
core | StudyTitle | M | {text} | Title of the study | http://schema.org/title | Title describing the study | |||
core | StudyDescription | M | {text} | Description of the study | http://schema.org/description | Description of the study | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | Preferred unit | URL | Definition | ||
core | ObservationUnitIdentifier | M | {text} | ObservationX | http://schema.org/identifier | Identifier corresponding to the entity that is being observed | |||
core | ObservationUnitName | M | {text} | ObservationX Name | http://schema.org/name | Name of the entity being observed | |||
core | ObservationUnitDescription | M | {text} | ObservationX description | http://schema.org/description | Description of the entity being observed | |||
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human-oral | host_family_relationship | X | {text};{text} | mother;ID298 | Relationships to other hosts in the same study; can include multiple relationships | ||||
human-oral | host_genotype | X | {text} | ST1 | Observed genotype | ||||
human-oral | host_phenotype | X | {termLabel} {[termID]} | Tinnitus [HP:0000360] | Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP | ||||
human-oral | host_body_temp | X | {float} {unit} | 36.5 degree Celsius | degree Celsius | Core body temperature of the host when sample was collected | |||
human-oral | host_body_mass_index | X | {float} {unit} | 22 kilogram per square meter | kilogram per square meter | Body mass index, calculated as weight/(height)squared | |||
human-oral | ihmc_ethnicity | X | {integer}|{text} | caucasian | Ethnicity of the subject | ||||
human-oral | host_occupation | X | {text} | veterinary | Most frequent job performed by subject | ||||
human-oral | medic_hist_perform | X | {boolean} | true | Whether full medical history was collected | ||||
human-oral | host_pulse | X | {float} {unit} | 65 beats per minute | beats per minute | Resting pulse, measured as beats per minute | |||
human-oral | perturbation | X | {text};{Rn/start_time/end_time/duration} | antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M | Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types | ||||
human-oral | samp_salinity | X | {float} {unit} | 1 milligram per liter | milligram per liter, practical salinity unit, percentage | Salinity is the total concentration of all dissolved salts in a liquid or solid (in the form of an extract obtained by centrifugation) sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater | |||
human-oral | oxy_stat_samp | X | [aerobic|anaerobic|other] | aerobic | Oxygenation status of sample | ||||
human-oral | temp | X | {float} {unit} | 25 degree Celsius | degree Celsius | Temperature of the sample at the time of sampling | |||
human-oral | organism_count | X | {text};{float} {unit};[qPCR|ATP|MPN|other] | total prokaryotes;3.5e7 cells per milliliter;qPCR | number of cells per cubic meter, number of cells per milliliter, number of cells per cubic centimeter | Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr) | |||
human-oral | samp_vol_we_dna_ext | X | {float} {unit} | 1500 milliliter | millliter, gram, milligram, square centimeter | Volume (ml), weight (g) of processed sample, or surface area swabbed from sample for DNA extraction | |||
human-oral | samp_store_temp | X | {float} {unit} | -80 degree Celsius | degree Celsius | Temperature at which sample was stored, e.g. -80 degree Celsius | |||
human-oral | samp_store_dur | X | {duration} | P1Y6M | Duration for which the sample was stored | ||||
human-oral | samp_store_loc | X | {text} | Freezer no:5 | Location at which sample was stored, usually name of a specific freezer/room | ||||
human-oral | misc_param | X | {text};{float} {unit} | Bicarbonate ion concentration;2075 micromole per kilogram | Any other measurement performed or parameter collected, that is not listed here | ||||
human-skin | dermatology_disord | X | {text} | no | History of dermatology disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, skin disease (https://disease-ontology.org/?id=DOID:37). | ||||
human-skin | time_since_last_wash | X | {duration} | P1D | Specification of the time since last wash | ||||
human-skin | dominant_hand | X | [left|right|ambidextrous] | right | Dominant hand of the subject | ||||
human-skin | host_subject_id | X | {text} | MPI123 | A unique identifier by which each subject can be referred to, de-identified, e.g. #131 | ||||
human-skin | host_age | X | {float} {unit} | 30 years | year, day, hour | Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees | |||
human-skin | host_sex | X | [male|female|neuter|hermaphrodite|not determined] | female | Physical sex of the host | ||||
human-skin | host_disease_stat | X | {termLabel} {[termID]} | measles [DOID:8622] | List of diseases with which the host has been diagnosed; can include multiple diagnoses. The terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org. | ||||
human-skin | ihmc_medication_code | X | {integer} | 810 | Can include multiple medication codes | ||||
human-skin | chem_administration | X | {termLabel} {[termID]}; {timestamp} | agar [CHEBI:2509];2018-05-11T20:00Z | List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi | ||||
human-skin | host_body_site | X | {termLabel} {[termID]} | Skin of palm of left hand [fma38303] | Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms, please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON | ||||
human-skin | host_body_product | X | {termLabel} {[termID]} | Portion of mucus [fma66938] | Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. For foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) terms, please see https://www.ebi.ac.uk/ols/ontologies/fma or https://www.ebi.ac.uk/ols/ontologies/uberon | ||||
human-skin | host_tot_mass | X | {float} {unit} | 65 kilogram | kilogram, gram | Total mass of the host at collection, the unit depends on host | |||
human-skin | host_height | X | {float} {unit} | 1.75 meter | centimeter, millimeter, meter | The height of subject | |||
human-skin | host_diet | X | {text} | high-fat | Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types | ||||
human-skin | host_last_meal | X | {text};{duration} | french fries;P5H30M | Content of last meal and time since feeding; can include multiple values | ||||
human-skin | host_family_relationship | X | {text};{text} | mother;ID298 | Relationships to other hosts in the same study; can include multiple relationships | ||||
human-skin | host_genotype | X | {text} | ST1 | Observed genotype | ||||
human-skin | host_phenotype | X | {termLabel} {[termID]} | Tinnitus [HP:0000360] | Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP | ||||
human-skin | host_body_temp | X | {float} {unit} | 36.5 degree Celsius | degree Celsius | Core body temperature of the host when sample was collected | |||
human-skin | host_body_mass_index | X | {float} {unit} | 22 kilogram per square meter | kilogram per square meter | Body mass index, calculated as weight/(height)squared | |||
human-skin | ihmc_ethnicity | X | {integer}|{text} | caucasian | Ethnicity of the subject | ||||
human-skin | host_occupation | X | {integer} | veterinary | Most frequent job performed by subject | ||||
human-skin | medic_hist_perform | X | {boolean} | true | Whether full medical history was collected | ||||
human-skin | host_pulse | X | {float} {unit} | 65 beats per minute | beats per minute | Resting pulse, measured as beats per minute | |||
human-skin | perturbation | X | {text};{Rn/start_time/end_time/duration} | antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M | Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types | ||||
human-skin | samp_salinity | X | {float} {unit} | 1 milligram per liter | milligram per liter, practical salinity unit, percentage | Salinity is the total concentration of all dissolved salts in a liquid or solid (in the form of an extract obtained by centrifugation) sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater | |||
human-skin | oxy_stat_samp | X | [aerobic|anaerobic|other] | aerobic | Oxygenation status of sample | ||||
human-skin | temp | X | {float} {unit} | 25 degree Celsius | degree Celsius | Temperature of the sample at the time of sampling | |||
human-skin | organism_count | X | {text};{float} {unit};[qPCR|ATP|MPN|other] | total prokaryotes;3.5e7 cells per milliliter;qPCR | number of cells per cubic meter, number of cells per milliliter, number of cells per cubic centimeter | Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr) | |||
human-skin | samp_vol_we_dna_ext | X | {float} {unit} | 1500 milliliter | millliter, gram, milligram, square centimeter | Volume (ml), weight (g) of processed sample, or surface area swabbed from sample for DNA extraction | |||
human-skin | samp_store_temp | X | {float} {unit} | -80 degree Celsius | degree Celsius | Temperature at which sample was stored, e.g. -80 degree Celsius | |||
human-skin | samp_store_dur | X | {duration} | P1Y6M | Duration for which the sample was stored | ||||
human-skin | samp_store_loc | X | {text} | Freezer no:5 | Location at which sample was stored, usually name of a specific freezer/room | ||||
human-skin | misc_param | X | {text};{float} {unit} | Bicarbonate ion concentration;2075 micromole per kilogram | Any other measurement performed or parameter collected, that is not listed here | ||||
human-vaginal | menarche | X | {timestamp} | 43231 | Date of most recent menstruation | ||||
human-vaginal | sexual_act | X | {text} | name | Current sexual partner and frequency of sex | ||||
human-vaginal | pregnancy | X | {timestamp} | 43231 | Date due of pregnancy | ||||
human-vaginal | douche | X | {timestamp} | 43231 | Date of most recent douche | ||||
human-vaginal | birth_control | X | {text} | yes, brand x | Specification of birth control medication used | ||||
human-vaginal | menopause | X | {timestamp} | 43231 | Date of onset of menopause | ||||
human-vaginal | hrt | X | {timestamp} | 43231 | Whether subject had hormone replacement theraphy, and if yes start date | ||||
human-vaginal | hysterectomy | X | {boolean} | no | Specification of whether hysterectomy was performed | ||||
human-vaginal | gynecologic_disord | X | {text} | no | History of gynecological disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, female reproductive system disease (https://disease-ontology.org/?id=DOID:229). | ||||
human-vaginal | urogenit_disord | X | {text} | no | History of urogenital disorders, can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, reproductive system disease (https://disease-ontology.org/?id=DOID:15) or urinary system disease (https://disease-ontology.org/?id=DOID:18). | ||||
human-vaginal | host_subject_id | X | {text} | MPI123 | A unique identifier by which each subject can be referred to, de-identified, e.g. #131 | ||||
human-vaginal | host_age | X | {float} {unit} | 30 years | year, day, hour | Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees | |||
human-vaginal | host_sex | X | [male|female|neuter|hermaphrodite|not determined] | female | Physical sex of the host | ||||
human-vaginal | host_disease_stat | X | {termLabel} {[termID]} | measles [DOID:8622] | List of diseases with which the host has been diagnosed; can include multiple diagnoses. The terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org. | ||||
human-vaginal | ihmc_medication_code | X | {integer} | 810 | Can include multiple medication codes | ||||
human-vaginal | chem_administration | X | {termLabel} {[termID]}; {timestamp} | agar [CHEBI:2509];2018-05-11T20:00Z | List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi | ||||
human-vaginal | host_body_site | X | {termLabel} {[termID]} | Ectocervix [fma86484] | Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms, please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON | ||||
human-vaginal | host_body_product | X | {termLabel} {[termID]} | Portion of mucus [fma66938] | Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. For foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) terms, please see https://www.ebi.ac.uk/ols/ontologies/fma or https://www.ebi.ac.uk/ols/ontologies/uberon | ||||
human-vaginal | host_tot_mass | X | {float} {unit} | 65 kilogram | kilogram, gram | Total mass of the host at collection, the unit depends on host | |||
human-vaginal | host_height | X | {float} {unit} | 1.75 meter | centimeter, millimeter, meter | The height of subject | |||
human-vaginal | host_diet | X | {text} | high-fat | Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types | ||||
human-vaginal | host_last_meal | X | {text};{duration} | french fries;P5H30M | Content of last meal and time since feeding; can include multiple values | ||||
human-vaginal | host_family_relationship | X | {text};{text} | mother;ID298 | Relationships to other hosts in the same study; can include multiple relationships | ||||
human-vaginal | host_genotype | X | {text} | ST1 | Observed genotype | ||||
human-vaginal | host_phenotype | X | {termLabel} {[termID]} | Tinnitus [HP:0000360] | Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP | ||||
human-vaginal | host_body_temp | X | {float} {unit} | 36.5 degree Celsius | degree Celsius | Core body temperature of the host when sample was collected | |||
human-vaginal | host_body_mass_index | X | {float} {unit} | 22 kilogram per square meter | kilogram per square meter | Body mass index, calculated as weight/(height)squared | |||
human-vaginal | ihmc_ethnicity | X | {integer}|{text} | caucasian | Ethnicity of the subject | ||||
human-vaginal | host_occupation | X | {integer} | veterinary | Most frequent job performed by subject | ||||
human-vaginal | medic_hist_perform | X | {boolean} | true | Whether full medical history was collected | ||||
human-vaginal | host_pulse | X | {float} {unit} | 65 beats per minute | beats per minute | Resting pulse, measured as beats per minute | |||
human-vaginal | perturbation | X | {text};{Rn/start_time/end_time/duration} | antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M | Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types | ||||
human-vaginal | samp_salinity | X | {float} {unit} | 1 milligram per liter | milligram per liter, practical salinity unit, percentage | Salinity is the total concentration of all dissolved salts in a liquid or solid (in the form of an extract obtained by centrifugation) sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater | |||
human-vaginal | oxy_stat_samp | X | [aerobic|anaerobic|other] | aerobic | Oxygenation status of sample | ||||
human-vaginal | temp | X | {float} {unit} | 25 degree Celsius | degree Celsius | Temperature of the sample at the time of sampling | |||
human-vaginal | organism_count | X | {text};{float} {unit};[qPCR|ATP|MPN|other] | total prokaryotes;3.5e7 cells per milliliter;qPCR | number of cells per cubic meter, number of cells per milliliter, number of cells per cubic centimeter | Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr) | |||
human-vaginal | samp_vol_we_dna_ext | X | {float} {unit} | 1500 milliliter | millliter, gram, milligram, square centimeter | Volume (ml), weight (g) of processed sample, or surface area swabbed from sample for DNA extraction | |||
human-vaginal | samp_store_temp | X | {float} {unit} | -80 degree Celsius | degree Celsius | Temperature at which sample was stored, e.g. -80 degree Celsius | |||
human-vaginal | samp_store_loc | X | {text} | Freezer no:5 | Location at which sample was stored, usually name of a specific freezer/room | ||||
human-vaginal | samp_store_dur | X | {duration} | P1Y6M | Duration for which the sample was stored | ||||
human-vaginal | misc_param | X | {text};{float} {unit} | Bicarbonate ion concentration;2075 micromole per kilogram | Any other measurement performed or parameter collected, that is not listed here | ||||
hydrocarbon resources-cores | hcr | M | [Oil Reservoir|Gas Reservoir|Oil Sand|Coalbed|Shale|Tight Oil Reservoir|Tight Gas Reservoir|other] | Oil Sand | Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation. This term should not be confused with the Hydrocarbon Occurrence term which also includes hydrocarbon-rich environments with currently limited commercial interest such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | hc_produced | M | [Oil|Gas-Condensate|Gas|Bitumen|Coalbed Methane|other] | Gas | Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, etc). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | basin | M | {text} | campos | Name of the basin (e.g. Campos) | ||||
hydrocarbon resources-cores | field | C | {text} | albacora | Name of the hydrocarbon field (e.g. Albacora) | ||||
hydrocarbon resources-cores | reservoir | C | {text} | carapebus | Name of the reservoir (e.g. Carapebus) | ||||
hydrocarbon resources-cores | hcr_temp | M | {float} - {float} {unit} | 150-295 degree Celsius | degree Celsius | Original temperature of the hydrocarbon resource |
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | AssayIdentifier | M | {text} | AssayId | http://schema.org/identifier | Identifier that corresponds to this assay | |||
core | AssayName | M | {text} | Assay name | http://schema.org/name | The name of this assay | |||
core | AssayDescription | M | {text} | assay description | http://schema.org/description | The description of this assay | |||
core | IsolationProtocol | M | {text} | http://example.com | The protocol used for isolation (name or url) | ||||
core | Facility | M | {text} | facility name | The facility that was used for generating the data | ||||
core | Platform | M | {text} | Illumina | The platform that was used for generating the data | ||||
core | InstrumentModel | M | {text} | Illumina HiSeq | The instrument model that was used for generating the data | ||||
core | Date | M | {timestamp} | 2018-06-03T0:0:0+0000 | https://schema.org/dateCreated | The date when the data generation took place | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | FileNameForward | M | {text} | NG-13425_Fyig_005_lib124679_5331_4_1.fastq.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
core | FileNameReverse | X | {text} | NG-13425_Fyig_005_lib124679_5331_4_2.fastq.gz | http://m-unlock.nl/ontology/file | File name of the reverse reads | |||
core | ForwardPrimer | M | {dna} | RGGATTAGATACCC | http://m-unlock.nl/ontology/forwardPrimer | The forward primer | |||
core | ReversePrimer | X | {dna} | CGACRRCCATGCANCACCT | http://m-unlock.nl/ontology/reversePrimer | The reverse primer used | |||
core | PrimerNames | X | {text} | 784F-1064R | http://m-unlock.nl/ontology/primerNames | The primer names corresponding to the primers used | |||
core | target_subfragment | M | {text} | V4 | http://m-unlock.nl/ontology/target_subfragment | Name of subfragment of a gene or locus (e.g. V3-4, V4, V6, V9, ITS). Important to e.g. identify special regions on marker genes like V6 on 16S rRNA | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | ForwardBarcodeSequence | M | {dna} | GGTACCAA | http://m-unlock.nl/ontology/forwardBarcode | The forward barcode used for this assay | |||
core | ReverseBarcodeSequence | X | {dna} | GGTAGAAT | http://m-unlock.nl/ontology/reverseBarcode | When applicable | |||
core | FileNameForward | M | {text} | NG-13425_Fyig_005_lib124679_5331_4_1.fastq.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
core | FileNameReverse | X | {text} | NG-13425_Fyig_005_lib124679_5331_4_2.fastq.gz | http://m-unlock.nl/ontology/file | When applicable | |||
core | ForwardPrimer | M | {dna} | RGGATTAGATACCC | http://m-unlock.nl/ontology/forwardPrimer | The forward primer | |||
core | ReversePrimer | X | {dna} | CGACRRCCATGCANCACCT | http://m-unlock.nl/ontology/reversePrimer | When applicable the reverse primer used | |||
core | PrimerNames | X | {text} | 784F-1064R | http://m-unlock.nl/ontology/primerNames | The primer names corresponding to the primers used | |||
core | target_subfragment | M | {text} | V4 | http://m-unlock.nl/ontology/target_subfragment | Name of subfragment of a gene or locus (e.g. V3-4, V4, V6, V9, ITS). Important to e.g. identify special regions on marker genes like V6 on 16S rRNA | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | FileNameForward | M | {text} | NG-13425_Fyig_005_lib124679_5331_4_1.fastq.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
core | FileNameReverse | X | {text} | NG-13425_Fyig_005_lib124679_5331_4_2.fastq.gz | http://m-unlock.nl/ontology/file | When applicable | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | FileName | M | {text} | filex.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | FileName | M | {text} | file.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
core | Reference | X | {text} | GCA_000007565.2 | http://m-unlock.nl/ontology/reference | Reference genome to which reads can be mapped to (e.g. GCA_... ENA number) | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Definition | |||
core | FileNameForward | M | {text} | NG-13425_Fyig_005_lib124679_5331_4_1.fastq.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
core | FileNameReverse | X | {text} | NG-13425_Fyig_005_lib124679_5331_4_2.fastq.gz | http://m-unlock.nl/ontology/file | When applicable the file name of the reverse reads | |||
core | Reference | X | {text} | GCA_000007565.2 | http://m-unlock.nl/ontology/reference | Reference genome to which reads can be mapped to (e.g. GCA_... ENA number) | |||