Data files

To be described

Bioreactor data acquisition - part 1

Bioreactor data acquisition - part 2

5L culture of CH10-12, 37°C batch/fed-batch culture with induction at 28°C for 12h

5L culture of CH10-12, 37°C batch/fed-batch culture with induction at 28°C for 12h

5L culture of CH10-12, 37°C batch/fed-batch culture with induction at 30°C for 10h

5L culture of CH10-12, 37°C batch/fed-batch culture with induction at 30°C for 10h

Samples taken in the 5L bioreactor BR01 in the culture of E. coli WK6 in batch and fed-batch strategy

Excel file containing the data anlysis of the BR01 culture: mass balances, specific growth rate, bioreactor volume, oxygen uptake rate (OUR)

Execution of a LEARN step: The case of growth coupled production hydrocarbons using S. cerevisiae

Gas analyzer (INNOVA 1313, Lumasense Technologies) Channel 4: gas out - BR01 Channel 6: gas in (reference) Sampling time: 60 s Flushing time: 45 s Analysis time: 15 s

Gas analyzer (INNOVA 1313, Lumasense Technologies) Channel 3: gas out - BR02 Channel 4: gas out - BR03 Channel 6: gas in (reference) Sampling time: 60 s Flushig time: 45 s Sampling time: 15 s

This is the template that can be used to populate your project using the IBISBA Populator software that is part of the IBISBA Hub. More information can be found here https://ibisba.github.io/handbook/ibisba_hub/project/

The monitor_and_extract_metadata.py script is designed to monitor a specified parent folder for new subfolders containing a Result.xml file. It extracts selected metadata from the Result.xml file and saves this metadata in both JSON and XML formats within the same subfolder.

Summay of results form fermentations

This is an example of workflow run with target muconic acid. The results is a tar with a collection of SBML, fused with GEM SBML model (yeast in this case)

Template to collect input data for LEARN step

The unlock metadata template using a modified version of the ISA structure.

This is superseded by https://hub.ibisba.eu/file_templates/1