Assays

What is an Assay?

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Created At

Updated At

Project

Submitter

Creator

Assay class

Assay type

Technology type

22 Assays visible to you, out of a total of 199

Calculate process variables

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Data processing

Study: Calculation of process variables

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Calculate process variables

Test

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Data processing

Study: Calculation of process variables

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:49

Computationally choose genome regions to delete

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Study: Computational strain optimization

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Conceptual and unit and process representation

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Data collection on mass and energy balances, chemical and physical equilibria

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Downstream processing

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess synthesis

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Energy integration

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess Integration

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

GPI Anchor Predictions

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: In-silico prediction and mass spectrometric val...

Study: In-Silico Prediction

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th May 2020 at 16:05

Growth experiment

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: In-silico prediction and mass spectrometric val...

Study: Culture experiments

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th May 2020 at 16:06

Identify enzymes from spectra

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: In-silico prediction and mass spectrometric val...

Study: Metabolic model analysis

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th May 2020 at 16:35

Liquid chromatography tandem mass spectrometry

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

No description specified

Submitter: Munazah Andrabi

Assay type: Protein Identification

Technology type: Liquid Chromatography-tandom Mass Spectrometry

Investigation: In-silico prediction and mass spectrometric val...

Study: Culture experiments

Organisms: No organisms

SOPs: No SOPs

Data files: Proteins detected by high-throughput mass spect...

Snapshots: No snapshots

Created: 18th May 2020 at 16:31, Last updated: 22nd Jun 2020 at 11:39

Mass Spectrometry Analysis

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: In-silico prediction and mass spectrometric val...

Study: Validation of the secretome of Aspergillus niger

Organisms: No organisms

SOPs: No SOPs

Data files: Proteins detected by high-throughput mass spect...

Snapshots: No snapshots

Created: 18th May 2020 at 16:32, Last updated: 22nd Jun 2020 at 11:40

Material and water integration

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess Integration

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Modeling of unit processes (reactions, separations recycles)

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Obtain metabolic model

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: In-silico prediction and mass spectrometric val...

Study: Metabolic model analysis

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th May 2020 at 16:33

Obtain proteomes

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

No description specified

Submitter: Munazah Andrabi

Assay type: Comparative Genomics

Technology type: Next generation sequencing

Investigation: In-silico prediction and mass spectrometric val...

Study: In-Silico Prediction

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th May 2020 at 16:02, Last updated: 18th May 2020 at 16:02

Orthology identification

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: In-silico prediction and mass spectrometric val...

Study: In-Silico Prediction

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th May 2020 at 16:05

Pathway improvement by mutations

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Study: Computational strain optimization

Organisms: No organisms

SOPs: Optimal Synthesis of Pathways – II

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43, Last updated: 10th Feb 2022 at 11:12

Process flowsheeting (process integration and recycles)

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Signal Peptide Predictions

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: In-silico prediction and mass spectrometric val...

Study: In-Silico Prediction

Organisms: No organisms

SOPs: No SOPs

Data files: Aspergillus niger CBS513.88 protein model verif..., Aspergillus niger centered protein clusters wit...

Snapshots: No snapshots

Created: 18th May 2020 at 16:04, Last updated: 3rd Sep 2020 at 13:49

Superstructure modeling and optimization

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Upstream operations

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess synthesis

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43