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Project
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AmpliconLibraryAssay
DNAseqAssay
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# Package | Structured comment name | Requirement | Value syntax | Example | Preferred unit | URL | Definition | ||
core | ProjectIdentifier | M | {text} | ProjectX | http://schema.org/identifier | Identifier corresponding to the project | |||
core | ProjectTitle | M | {text} | The title describing project X | http://schema.org/title | Title describing the project | |||
core | ProjectDescription | M | {text} | A longer description that explains what project X is all about. | http://schema.org/description | Description of the project | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | Preferred unit | URL | Definition | ||
core | InvestigationIdentifier | M | {text} | InvestigationID | http://schema.org/identifier | Identifier corresponding to the investigation | |||
core | InvestigationTitle | M | {text} | Title about the investigation | http://schema.org/title | Title describing the investigation | |||
core | InvestigationDescription | M | {text} | Description of the investigation | http://schema.org/description | Description of the investigation | |||
core | FirstName | M | {text} | Jane | http://schema.org/givenName | The given name of a person | |||
core | LastName | M | {text} | Doe | http://schema.org/familyName | The family name of a person | |||
core | M | {text} | jane.doe@wur.nl | http://schema.org/email | The email address of a person | ||||
core | ORCID | M | {integer} | 123456789 | The orcid of a given person | ||||
core | Organization | M | {text} | Wageningen | http://schema.org/memberOf | Member of an organization | |||
core | Department | M | {text} | Laboratory of Systems and Synthetic Biology | http://schema.org/department | The department this person belongs to | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | Preferred unit | URL | Definition | ||
core | StudyIdentifier | M | {text} | StudyX | http://schema.org/identifier | Identifier corresponding to the study | |||
core | StudyTitle | M | {text} | Title of the study | http://schema.org/title | Title describing the study | |||
core | StudyDescription | M | {text} | Description of the study | http://schema.org/description | Description of the study | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | Preferred unit | URL | Definition | ||
core | ObservationUnitIdentifier | M | {text} | ObservationX | http://schema.org/identifier | Identifier corresponding to the entity that is being observed | |||
core | ObservationUnitName | M | {text} | ObservationX Name | http://schema.org/name | Name of the entity being observed | |||
core | ObservationUnitDescription | M | {text} | ObservationX description | http://schema.org/description | Description of the entity being observed | |||
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hydrocarbon resources-cores | tvdss_of_hcr_temp | X | {float} {unit} | 1345 m | meter | True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m) | |||
hydrocarbon resources-cores | hcr_pressure | X | {float} - {float} {unit} | 10 - 15 psi | atmosphere, kilopascal | Original pressure of the hydrocarbon resource | |||
hydrocarbon resources-cores | tvdss_of_hcr_pressure | X | {float} {unit} | 1578 m | meter | True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m ) | |||
hydrocarbon resources-cores | permeability | X | {integer} - {integer} {unit} | 5 - 10 m2 | mD | Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences)) | |||
hydrocarbon resources-cores | porosity | X | {float} - {float} {unit} | 1.5 - 1.9 ml | percentage | Porosity of deposited sediment is volume of voids divided by the total volume of sample | |||
hydrocarbon resources-cores | lithology | C | [Basement|Chalk|Chert|Coal|Conglomerate|Diatomite|Dolomite|Limestone|Sandstone|Shale|Siltstone|Volcanic|other] | Volcanic | Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | depos_env | C | [Continental - Alluvial|Continental - Aeolian|Continental - Fluvial|Continental - Lacustrine|Transitional - Deltaic|Transitional - Tidal|Transitional - Lagoonal|Transitional - Beach|Transitional - Lake|Marine - Shallow|Marine - Deep|Marine - Reef|Other - Evaporite|Other - Glacial|Other - Volcanic|other] | Continental - Alluvial | Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | hcr_geol_age | C | [Archean|Cambrian|Carboniferous|Cenozoic|Cretaceous|Devonian|Jurassic|Mesozoic|Neogene|Ordovician|Paleogene|Paleozoic|Permian|Precambrian|Proterozoic|Silurian|Triassic|other] | Silurian | Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | owc_tvdss | X | {float} {unit} | 1.5 m | meter | Depth of the original oil water contact (OWC) zone (average) (m TVDSS) | |||
hydrocarbon resources-cores | hcr_fw_salinity | C | {float} {unit} | 1.5 m | milligram per liter | Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS | |||
hydrocarbon resources-cores | sulfate_fw | M | {float} {unit} | 1 milligram per liter | milligram per liter | Original sulfate concentration in the hydrocarbon resource | |||
hydrocarbon resources-cores | vfa_fw | M | {float} {unit} | 1 milligram per liter | milligram per liter | Original volatile fatty acid concentration in the hydrocarbon resource | |||
hydrocarbon resources-cores | sr_kerog_type | X | [Type I|Type II|Type III|Type IV|other] | Type IV | Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | sr_lithology | X | [Clastic|Carbonate|Coal|Biosilicieous|other] | Coal | Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | sr_dep_env | X | [Lacustine|Fluvioldeltaic|Fluviomarine|Marine|other] | Marine | Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | sr_geol_age | X | [Archean|Cambrian|Carboniferous|Cenozoic|Cretaceous|Devonian|Jurassic|Mesozoic|Neogene|Ordovician|Paleogene|Paleozoic|Permian|Precambrian|Proterozoic|Silurian|Triassic|other] | Silurian | Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | samp_well_name | C | {text} | BXA1123 | Name of the well (e.g. BXA1123) where sample was taken | ||||
hydrocarbon resources-cores | win | C | {text} | AFR5678 | A unique identifier of a well or wellbore. This is part of the Global Framework for Well Identification initiative which is compiled by the Professional Petroleum Data Management Association (PPDM) in an effort to improve well identification systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690) | ||||
hydrocarbon resources-cores | samp_type | M | [core|rock trimmings|drill cuttings|piping section|coupon|pigging debris|solid deposit|produced fluid|produced water|injected water|water from treatment plant|fresh water|sea water|drilling fluid|procedural blank|positive control|negative control|other] | solid deposit | Type of material (i.e. sample) collected. Includes types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | samp_subtype | C | [oil phase|water phase|biofilm|not applicable|other] | biofilm | Name of sample sub-type. For example if "sample type" is "Produced Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-cores | temp | M | {float} {unit} | 25 degree Celsius | degree Celsius | Temperature of the sample at the time of sampling | |||
hydrocarbon resources-cores | pressure | X | {float} {unit} | 50 atmosphere | atmosphere | Pressure to which the sample is subject to, in atmospheres | |||
hydrocarbon resources-cores | samp_tvdss | C | {float}-{float} {unit} | 1325.75-1362.25 m | meter | Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g. 1325.75-1362.25 m | |||
hydrocarbon resources-cores | samp_md | X | {float} {unit};[GL|DF|RT|KB|MSL|other] | 1534 meter;MSL | meter | In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If "other" is specified, please propose entry in "additional info" field | |||
hydrocarbon resources-cores | elev | X | {float} {unit} | 100 meter | meter | Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit | |||
hydrocarbon resources-cores | oxy_stat_samp | X | [aerobic|anaerobic|other] | aerobic | Oxygenation status of sample | ||||
hydrocarbon resources-cores | samp_transport_cond | X | {float} {unit};{float} {unit} | 5 days;-20 degree Celsius | days;degree Celsius | Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 °C) | |||
hydrocarbon resources-cores | samp_store_temp | X | {float} {unit} | -80 degree Celsius | degree Celsius | Temperature at which sample was stored, e.g. -80 degree Celsius | |||
hydrocarbon resources-cores | samp_store_dur | X | {duration} | P1Y6M | Duration for which the sample was stored | ||||
hydrocarbon resources-cores | samp_store_loc | X | {text} | Freezer no:5 | Location at which sample was stored, usually name of a specific freezer/room | ||||
hydrocarbon resources-cores | samp_vol_we_dna_ext | C | {float} {unit} | 1500 milliliter | millliter, gram, milligram, square centimeter | Volume (ml), weight (g) of processed sample, or surface area swabbed from sample for DNA extraction | |||
hydrocarbon resources-cores | organism_count | C | {text};{float} {unit};[qPCR|ATP|MPN|other] | total prokaryotes;3.5e7 cells per milliliter;qPCR | number of cells per cubic meter, number of cells per milliliter, number of cells per cubic centimeter | Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr) | |||
hydrocarbon resources-cores | organism_count_qpcr_info | X | {text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles | 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles) | number of cells per gram (or ml or cm^2) | If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles) | |||
hydrocarbon resources-cores | ph | C | {float} | 7.2 | Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid | ||||
hydrocarbon resources-cores | samp_salinity | M | {float} {unit} | 1 milligram per liter | milligram per liter, practical salinity unit, percentage | Salinity is the total concentration of all dissolved salts in a liquid or solid (in the form of an extract obtained by centrifugation) sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater | |||
hydrocarbon resources-cores | alkalinity | X | {float} {unit} | 50 milligram per liter | milliequivalent per liter, milligram per liter | Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate | |||
hydrocarbon resources-cores | alkalinity_method | X | {text} | titration | Method used for alkalinity measurement | ||||
hydrocarbon resources-cores | sulfate | C | {float} {unit} | 5 micromole per liter | micromole per liter, milligram per liter, parts per million | Concentration of sulfate in the sample | |||
hydrocarbon resources-cores | sulfide | C | {float} {unit} | 2 micromole per liter | micromole per liter, milligram per liter, parts per million | Concentration of sulfide in the sample | |||
hydrocarbon resources-cores | tot_sulfur | C | {float} {unit} | 3.5 micromole per liter | milligram per liter, parts per million | Concentration of total sulfur in the sample | |||
hydrocarbon resources-cores | nitrate | C | {float} {unit} | 65 micromole per liter | micromole per liter, milligram per liter, parts per million | Concentration of nitrate in the sample | |||
hydrocarbon resources-cores | nitrite | C | {float} {unit} | 0.5 micromole per liter | micromole per liter, milligram per liter, parts per million | Concentration of nitrite in the sample | |||
hydrocarbon resources-cores | ammonium | C | {float} {unit} | 1.5 milligram per liter | micromole per liter, milligram per liter, parts per million | Concentration of ammonium in the sample | |||
hydrocarbon resources-cores | tot_nitro | X | {float} {unit} | 50 micromole per liter | microgram per liter, micromole per liter, milligram per liter | Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen | |||
hydrocarbon resources-cores | diss_iron | C | {float} {unit} | 43 micromole per liter | milligram per liter | Concentration of dissolved iron in the sample | |||
hydrocarbon resources-cores | sodium | X | {float} {unit} | 10.5 milligram per liter | milligram per liter, parts per million | Sodium concentration in the sample | |||
hydrocarbon resources-cores | chloride | X | {float} {unit} | 5000 milligram per liter | milligram per liter, parts per million | Concentration of chloride in the sample | |||
hydrocarbon resources-cores | potassium | X | {float} {unit} | 463 milligram per liter | milligram per liter, parts per million | Concentration of potassium in the sample | |||
hydrocarbon resources-cores | magnesium | X | {float} {unit} | 52.8 micromole per kilogram | mole per liter, milligram per liter, parts per million, micromole per kilogram | Concentration of magnesium in the sample | |||
hydrocarbon resources-cores | calcium | X | {float} {unit} | 0.2 micromole per liter | milligram per liter, micromole per liter, parts per million | Concentration of calcium in the sample | |||
hydrocarbon resources-cores | tot_iron | C | {float} {unit} | 0.2 micromole per liter | milligram per liter, milligram per kilogram | Concentration of total iron in the sample | |||
hydrocarbon resources-cores | diss_org_carb | X | {float} {unit} | 197 micromole per liter | micromole per liter, milligram per liter | Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid | |||
hydrocarbon resources-cores | diss_inorg_carb | X | {float} {unit} | 2059 micromole per kilogram | microgram per liter, milligram per liter, parts per million | Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter | |||
hydrocarbon resources-cores | diss_inorg_phosp | C | {float} {unit} | 56.5 micromole per liter | microgram per liter, milligram per liter, parts per million | Concentration of dissolved inorganic phosphorus in the sample | |||
hydrocarbon resources-cores | tot_phosp | X | {float} {unit} | 0.03 milligram per liter | micromole per liter, milligram per liter, parts per million | Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus | |||
hydrocarbon resources-cores | suspend_solids | X | {text};{float} {unit} | 0.2 micromole per liter | gram, microgram, milligram per liter, mole per liter, gram per liter, part per million | Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances | |||
hydrocarbon resources-cores | density | X | {float} {unit} | 1000 kilogram per cubic meter | gram per cubic meter, gram per cubic centimeter | Density of the sample, which is its mass per unit volume (aka volumetric mass density) | |||
hydrocarbon resources-cores | diss_carb_dioxide | X | {float} {unit} | 5 milligram per liter | micromole per liter, milligram per liter | Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample | |||
hydrocarbon resources-cores | diss_oxygen_fluid | X | {float} {unit} | 0.2 micromole per liter | micromole per kilogram, milligram per liter | Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity (e.g. Mic). | |||
hydrocarbon resources-cores | vfa | C | {float} {unit} | 0.2 micromole per liter | milligram per liter, parts per million | Concentration of Volatile Fatty Acids in the sample | |||
hydrocarbon resources-cores | benzene | C | {float} {unit} | 0.2 micromole per liter | milligram per liter, parts per million | Concentration of benzene in the sample | |||
hydrocarbon resources-cores | toluene | C | {float} {unit} | 0.2 micromole per liter | milligram per liter, parts per million | Concentration of toluene in the sample | |||
hydrocarbon resources-cores | ethylbenzene | C | {float} {unit} | 0.2 micromole per liter | milligram per liter, parts per million | Concentration of ethylbenzene in the sample | |||
hydrocarbon resources-cores | xylene | C | {float} {unit} | 0.2 micromole per liter | milligram per liter, parts per million | Concentration of xylene in the sample | |||
hydrocarbon resources-cores | api | M | {float} {unit} | 31.1 API | degrees API | API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1° API) | |||
hydrocarbon resources-cores | tan | C | {float} {unit} | 5.2 TAN | milligram per liter | Total Acid Number (TAN) is a measurement of acidity that is determined by the amount of potassium hydroxide in milligrams that is needed to neutralize the acids in one gram of oil. It is an important quality measurement of crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number) | |||
hydrocarbon resources-cores | viscosity | X | {float} {unit};{float} {unit} | 3.5 cp; 100 C | cP at degree Celsius | A measure of oil's resistance to gradual deformation by shear stress or tensile stress (e.g. 3.5 cp; 100 °C) | |||
hydrocarbon resources-cores | pour_point | X | {float} {unit} | 35 c | degree Celsius | Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high pour point is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point) | |||
hydrocarbon resources-cores | saturates_pc | C | {text};{float} {unit} | Bicarbonate ion concentration;2075 micromole per kilogram | percent | Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene) | |||
hydrocarbon resources-cores | aromatics_pc | C | {text};{float} {unit} | Bicarbonate ion concentration;2075 micromole per kilogram | percent | Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene) | |||
hydrocarbon resources-cores | resins_pc | C | {text};{float} {unit} | Bicarbonate ion concentration;2075 micromole per kilogram | percent | Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene) | |||
hydrocarbon resources-cores | asphaltenes_pc | C | {text};{float} {unit} | Bicarbonate ion concentration;2075 micromole per kilogram | percent | Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene) | |||
hydrocarbon resources-cores | misc_param | X | {text};{float} {unit} | Bicarbonate ion concentration;2075 micromole per kilogram | Any other measurement performed or parameter collected, that is not listed here | ||||
hydrocarbon resources-cores | additional_info | X | {text} | additional information field | Information that doesn't fit anywhere else. Can also be used to propose new entries for fields with controlled vocabulary | ||||
hydrocarbon resources-fluids/swabs | hcr | M | [Oil Reservoir|Gas Reservoir|Oil Sand|Coalbed|Shale|Tight Oil Reservoir|Tight Gas Reservoir|other] | Oil Sand | Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation. This term should not be confused with the Hydrocarbon Occurrence term which also includes hydrocarbon-rich environments with currently limited commercial interest such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-fluids/swabs | hc_produced | M | [Oil|Gas-Condensate|Gas|Bitumen|Coalbed Methane|other] | Gas | Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, etc). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-fluids/swabs | basin | M | {text} | campos | Name of the basin (e.g. Campos) | ||||
hydrocarbon resources-fluids/swabs | field | C | {text} | albacora | Name of the hydrocarbon field (e.g. Albacora) | ||||
hydrocarbon resources-fluids/swabs | reservoir | C | {text} | carapebus | Name of the reservoir (e.g. Carapebus) | ||||
hydrocarbon resources-fluids/swabs | hcr_temp | C | {float} - {float} {unit} | 150-295 degree Celsius | degree Celsius | Original temperature of the hydrocarbon resource | |||
hydrocarbon resources-fluids/swabs | tvdss_of_hcr_temp | X | {float} {unit} | 1345m | meter | True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m) | |||
hydrocarbon resources-fluids/swabs | hcr_pressure | X | {float} - {float} {unit} | 5 - 6 PSA | atmosphere, kilopascal | Original pressure of the hydrocarbon resource | |||
hydrocarbon resources-fluids/swabs | tvdss_of_hcr_pressure | X | {float} {unit} | 1578 m | meter | True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m ) | |||
hydrocarbon resources-fluids/swabs | lithology | C | [Basement|Chalk|Chert|Coal|Conglomerate|Diatomite|Dolomite|Limestone|Sandstone|Shale|Siltstone|Volcanic|other] | Volcanic | Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-fluids/swabs | depos_env | C | [Continental - Alluvial|Continental - Aeolian|Continental - Fluvial|Continental - Lacustrine|Transitional - Deltaic|Transitional - Tidal|Transitional - Lagoonal|Transitional - Beach|Transitional - Lake|Marine - Shallow|Marine - Deep|Marine - Reef|Other - Evaporite|Other - Glacial|Other - Volcanic|other] | Marine - Reef | Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-fluids/swabs | hcr_geol_age | C | [Archean|Cambrian|Carboniferous|Cenozoic|Cretaceous|Devonian|Jurassic|Mesozoic|Neogene|Ordovician|Paleogene|Paleozoic|Permian|Precambrian|Proterozoic|Silurian|Triassic|other] | Silurian | Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-fluids/swabs | hcr_fw_salinity | C | {float} {unit} | 5 TDS | milligram per liter | Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS | |||
hydrocarbon resources-fluids/swabs | sulfate_fw | C | {float} {unit} | 1 milligram per liter | milligram per liter | Original sulfate concentration in the hydrocarbon resource | |||
hydrocarbon resources-fluids/swabs | vfa_fw | C | {float} {unit} | 1 milligram per liter | milligram per liter | Original volatile fatty acid concentration in the hydrocarbon resource | |||
hydrocarbon resources-fluids/swabs | prod_start_date | C | {timestamp} | 43231 | Date of field's first production | ||||
hydrocarbon resources-fluids/swabs | prod_rate | C | {float} {unit} | 524 m3 / day | cubic meter per day | Oil and/or gas production rates per well (e.g. 524 m3 / day) | |||
hydrocarbon resources-fluids/swabs | water_production_rate | C | {float} {unit} | 987 m3 / day | cubic meter per day | Water production rates per well (e.g. 987 m3 / day) | |||
hydrocarbon resources-fluids/swabs | water_cut | M | {float} {unit} | 0.55 | percent | Current amount of water (%) in a produced fluid stream; or the average of the combined streams | |||
hydrocarbon resources-fluids/swabs | iwf | M | {float} {unit} | 0.87 | percent | Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%) | |||
hydrocarbon resources-fluids/swabs | add_recov_method | M | [Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer Addition|Surfactant Addition|Not Applicable|other];{timestamp} | Polymer Addition;2018-06-21T14:30Z | Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If "other" is specified, please propose entry in "additional info" field | ||||
hydrocarbon resources-fluids/swabs | iw_bt_date_well | X | {timestamp} | 43231 | Injection water breakthrough date per well following a secondary and/or tertiary recovery | ||||
hydrocarbon resources-fluids/swabs | biocide | C | {text};{text};{timestamp} | ALPHA 1427;Baker Hughes;2008-01-23 | List of biocides (commercial name of product and supplier) and date of administration | ||||
hydrocarbon resources-fluids/swabs | biocide_admin_method | C | {float} {unit};{Rn/start_time/end_time/duration};{duration} | 150 mg/l; weekly; 4 hr; 3 days | milligram per liter | Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days) | |||
hydrocarbon resources-fluids/swabs | chem_treatment | X | {text};{text};{timestamp} | ACCENT 1125;DOW;2010-11-17 | List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included | ||||
hydrocarbon resources-fluids/swabs | chem_treatment_method | X | {float} {unit};{Rn/start_time/end_time/duration};{duration};{duration} | 50 mg/l; twice a week; 1 hr; 0 days | milligram per liter | Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days) |
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | AssayIdentifier | M | {text} | AssayId | http://schema.org/identifier | Identifier that corresponds to this assay | |||
core | AssayName | M | {text} | Assay name | http://schema.org/name | The name of this assay | |||
core | AssayDescription | M | {text} | assay description | http://schema.org/description | The description of this assay | |||
core | IsolationProtocol | M | {text} | http://example.com | The protocol used for isolation (name or url) | ||||
core | Facility | M | {text} | facility name | The facility that was used for generating the data | ||||
core | Platform | M | {text} | Illumina | The platform that was used for generating the data | ||||
core | InstrumentModel | M | {text} | Illumina HiSeq | The instrument model that was used for generating the data | ||||
core | Date | M | {timestamp} | 2018-06-03T0:0:0+0000 | https://schema.org/dateCreated | The date when the data generation took place | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | FileNameForward | M | {text} | NG-13425_Fyig_005_lib124679_5331_4_1.fastq.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
core | FileNameReverse | X | {text} | NG-13425_Fyig_005_lib124679_5331_4_2.fastq.gz | http://m-unlock.nl/ontology/file | File name of the reverse reads | |||
core | ForwardPrimer | M | {dna} | RGGATTAGATACCC | http://m-unlock.nl/ontology/forwardPrimer | The forward primer | |||
core | ReversePrimer | X | {dna} | CGACRRCCATGCANCACCT | http://m-unlock.nl/ontology/reversePrimer | The reverse primer used | |||
core | PrimerNames | X | {text} | 784F-1064R | http://m-unlock.nl/ontology/primerNames | The primer names corresponding to the primers used | |||
core | target_subfragment | M | {text} | V4 | http://m-unlock.nl/ontology/target_subfragment | Name of subfragment of a gene or locus (e.g. V3-4, V4, V6, V9, ITS). Important to e.g. identify special regions on marker genes like V6 on 16S rRNA | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | ForwardBarcodeSequence | M | {dna} | GGTACCAA | http://m-unlock.nl/ontology/forwardBarcode | The forward barcode used for this assay | |||
core | ReverseBarcodeSequence | X | {dna} | GGTAGAAT | http://m-unlock.nl/ontology/reverseBarcode | When applicable | |||
core | FileNameForward | M | {text} | NG-13425_Fyig_005_lib124679_5331_4_1.fastq.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
core | FileNameReverse | X | {text} | NG-13425_Fyig_005_lib124679_5331_4_2.fastq.gz | http://m-unlock.nl/ontology/file | When applicable | |||
core | ForwardPrimer | M | {dna} | RGGATTAGATACCC | http://m-unlock.nl/ontology/forwardPrimer | The forward primer | |||
core | ReversePrimer | X | {dna} | CGACRRCCATGCANCACCT | http://m-unlock.nl/ontology/reversePrimer | When applicable the reverse primer used | |||
core | PrimerNames | X | {text} | 784F-1064R | http://m-unlock.nl/ontology/primerNames | The primer names corresponding to the primers used | |||
core | target_subfragment | M | {text} | V4 | http://m-unlock.nl/ontology/target_subfragment | Name of subfragment of a gene or locus (e.g. V3-4, V4, V6, V9, ITS). Important to e.g. identify special regions on marker genes like V6 on 16S rRNA | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | FileNameForward | M | {text} | NG-13425_Fyig_005_lib124679_5331_4_1.fastq.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
core | FileNameReverse | X | {text} | NG-13425_Fyig_005_lib124679_5331_4_2.fastq.gz | http://m-unlock.nl/ontology/file | When applicable | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | FileName | M | {text} | filex.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Preferred unit | Definition | ||
core | FileName | M | {text} | file.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
core | Reference | X | {text} | GCA_000007565.2 | http://m-unlock.nl/ontology/reference | Reference genome to which reads can be mapped to (e.g. GCA_... ENA number) | |||
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# Package | Structured comment name | Requirement | Value syntax | Example | URL | Definition | |||
core | FileNameForward | M | {text} | NG-13425_Fyig_005_lib124679_5331_4_1.fastq.gz | http://m-unlock.nl/ontology/file | File name of the forward reads | |||
core | FileNameReverse | X | {text} | NG-13425_Fyig_005_lib124679_5331_4_2.fastq.gz | http://m-unlock.nl/ontology/file | When applicable the file name of the reverse reads | |||
core | Reference | X | {text} | GCA_000007565.2 | http://m-unlock.nl/ontology/reference | Reference genome to which reads can be mapped to (e.g. GCA_... ENA number) | |||