Optimal Synthesis of Pathways – III
Learn, Scale-up

Scale-up

Creators: Konstantinos Pyrgakis, Ioannis Ntekas, ANTONIS KOKOSSIS

Submitter: Konstantinos Pyrgakis

Optimal Synthesis of Pathways – II
Learn, Design

Pathways elimination

Creators: Konstantinos Pyrgakis, Ioannis Ntekas, ANTONIS KOKOSSIS

Submitter: Konstantinos Pyrgakis

Optimal Synthesis of Pathways – I
Learn

GEM preparation

Creators: Konstantinos Pyrgakis, Ioannis Ntekas, ANTONIS KOKOSSIS

Submitter: Konstantinos Pyrgakis

FBA
Uncurated Protocols Library

Flux balance analysis is a mathematical approach for analyzing the flow of metabolites through a metabolic network. It is performed for heterologous pathways generated by RetroPath2.0. The tool performs the following steps: -Merges a user-defined GEM SBML model with each given heterologous pathway individually. -Performs FBA using the CobraPy package. Three different analysis methods are proposed; two of which are native CobraPy methods - standard FBA and Parsimonious FBA, the other one proposed ...

Creator: Melchior du Lac

Submitter: Melchior du Lac

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