Projects: Uncurated Protocols Library
Institutions: INRA - Institut National de la Recherche Agronomique

Roles: Postdoc
Expertise: Bacterial Cell Cycle, Kinetic modelling, Workflows
Tools: FBA, C, Python, Java, Cytometry and fluorescent microscopy
Computational Biologist
Scale-up
Creators: Konstantinos Pyrgakis, Ioannis Ntekas, ANTONIS KOKOSSIS
Submitter: Konstantinos Pyrgakis
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Pathways elimination
Creators: Konstantinos Pyrgakis, Ioannis Ntekas, ANTONIS KOKOSSIS
Submitter: Konstantinos Pyrgakis
Investigations: Computational strain design
Studies: Computational strain optimization
Assays: Pathway improvement by mutations
GEM preparation
Creators: Konstantinos Pyrgakis, Ioannis Ntekas, ANTONIS KOKOSSIS
Submitter: Konstantinos Pyrgakis
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Flux balance analysis is a mathematical approach for analyzing the flow of metabolites through a metabolic network. It is performed for heterologous pathways generated by RetroPath2.0. The tool performs the following steps: -Merges a user-defined GEM SBML model with each given heterologous pathway individually. -Performs FBA using the CobraPy package. Three different analysis methods are proposed; two of which are native CobraPy methods - standard FBA and Parsimonious FBA, the other one proposed ...
Creator: Melchior du Lac
Submitter: Melchior du Lac
Investigations: No Investigations
Studies: No Studies
Assays: No Assays