Melchior du Lac
Computational Biologist
SEEK ID: https://hub.ibisba.eu/people/106
Location:
France
ORCID:
https://orcid.org/0000-0002-9984-4689
Joined: 19th Nov 2018
Expertise: Bacterial Cell Cycle, Kinetic modelling, Workflows
Tools: FBA, C, Python, Java, Cytometry and fluorescent microscopy
Roles
Programme administrator
Their tagsRelated items
IBISBA is designed to accelerate end-to-end bioprocess development, linking best-in-class R&D facilities to provide seamless multi-technology services.
Focusing on the different R&D phases in bioprocess development, IBISBA offers services related to computer-assisted design of biocomponents, construction of enzymes and microbial strains, the fermentation, downstream processing and project knowledge asset management.
Projects: Uncurated Protocols Library, Template library, Muconic Acid Production in Yeast, Public announcements and documents, IBISBA Library, Curated Protocols Library, Test, DBTL-P, test
Web page: http://www.ibisba.eu
The collection of protocols that have not yet been curated by IBISBA WP6
Programme: IBISBA
Public web page: http://www.ibisba.eu
This is an example of workflow run with target muconic acid. The results is a tar with a collection of SBML, fused with GEM SBML model (yeast in this case)
Creator: Melchior du Lac
Submitter: Melchior du Lac
Abstract
Authors: Melchior du Lac, Thomas Duigou, Joan Hérisson, Pablo Carbonell, Neil Swainston, Valentin Zulkower, Forum Shah, Léon Faure, Mostafa Mahdy, Paul Soudier, Jean-Loup Faulon
Date Published: 15th Jun 2020
Publication Type: Journal
Abstract (Expand)
Authors: T. Duigou, M. du Lac, P. Carbonell, J. L. Faulon
Date Published: No date defined
Publication Type: Not specified
Given one or a collection of heterolgous pathways in SBML files, generate the SBOL for the constructs and the assembly protocols to build them
DownloadGiven a collection of SBML files with the heterologous pathways, calculate the FBA and the Gibbs free energy of the pathways.
Perform retrosynthesis using RetroPath2.0 and convert the heterologous pathways to SBML files
External LinkGalaxy workflow that predicts heterologous pathways for the production of a compound of interest in an organism of interest
