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- Stefan Helfrich
SEEK ID: https://hub.ibisba.eu/people/104
Location:
Germany
Expertise: Software Engineering, Workflows, Bioinformatics
Tools: KNIME, Python, Java, Common Workflow Language
Related items
The collection of protocols that have not yet been curated by IBISBA WP6
Programme: IBISBA
Public web page: http://www.ibisba.eu
Construction of a P. putida KT2440 producing cis,cis-muconate from glucose, benzoate, or p-coumarate
Organisms: Pseudomonas putida
Programme: IBISBA 2020 f2f
Public web page: Not specified
Organisms: Pseudomonas putida
Programme: IBISBA 2020 f2f
Public web page: Not specified
Organisms: Not specified
Programme: IBISBA
Public web page: Not specified
Organisms: Not specified
Snapshots: No snapshots
Studies: Assemble parts, Transformation of production host
Assays: Automated HT spreadind using colony picker with compartementalized Qtrays, Automated recovery of transformant and distribution in appropriate format, Cell preparation from stock solution, Colony picking, Colony picking for verification of the genetic material, In vitro assembly of the DNA construct, Incubation of cells in recovery medium, Make glycerol stock for part storage, Make glycerol stock for strain storage, Order synthetic DNA, Preparation and distribution of recovery medium in microplate format, Preparation and distribution of transformation medium in microplate format, Prepare cultivation media for cultivation after colony picking, Prepare cultivation media for making glycerol stocks, Prepare cultivation media for transformation step, Prepare liquid cultivation medium for transformation, Prepare solid cultivation medium for transformation, Prepare template DNA for verification of the genetic material, Prepare transformation competent cells of the cloning host organism, Recombinant clone screening and selection (depends on transformation imp..., Select transformation conditions, Transform genetic material into cloning host organism, Transformation, Transformation, Verify by recombinant clone screening, Withdraw parts from storage
Snapshots: No snapshots
Snapshots: No snapshots
Studies: Assemble parts, Transformation of production host
Assays: Automated HT spreadind using colony picker with compartementalized Qtrays, Automated recovery of transformant and distribution in appropriate format, Cell preparation from stock solution, Colony picking, Colony picking for verification of the genetic material, In vitro assembly of the DNA construct, Incubation of cells in recovery medium, Make glycerol stock for part storage, Make glycerol stock for strain storage, Order synthetic DNA, Preparation and distribution of recovery medium in microplate format, Preparation and distribution of transformation medium in microplate format, Prepare cultivation media for cultivation after colony picking, Prepare cultivation media for making glycerol stocks, Prepare cultivation media for transformation step, Prepare liquid cultivation medium for transformation, Prepare solid cultivation medium for transformation, Prepare template DNA for verification of the genetic material, Prepare transformation competent cells of the cloning host organism, Recombinant clone screening and selection (depends on transformation imp..., Select transformation conditions, Transform genetic material into cloning host organism, Transformation, Transformation, Verify by recombinant clone screening, Withdraw parts from storage
Person responsible: Not available
Snapshots: No snapshots
Investigation: Strain engineering
Assays: No Assays
Person responsible: Not available
Snapshots: No snapshots
Investigation: Strain engineering
Assays: Automated HT spreadind using colony picker with compartementalized Qtrays, Automated recovery of transformant and distribution in appropriate format, Cell preparation from stock solution, Colony picking, Colony picking for verification of the genetic material, In vitro assembly of the DNA construct, Incubation of cells in recovery medium, Make glycerol stock for part storage, Make glycerol stock for strain storage, Order synthetic DNA, Preparation and distribution of recovery medium in microplate format, Preparation and distribution of transformation medium in microplate format, Prepare cultivation media for cultivation after colony picking, Prepare cultivation media for making glycerol stocks, Prepare cultivation media for transformation step, Prepare liquid cultivation medium for transformation, Prepare solid cultivation medium for transformation, Prepare template DNA for verification of the genetic material, Prepare transformation competent cells of the cloning host organism, Recombinant clone screening and selection (depends on transformation imp..., Select transformation conditions, Transform genetic material into cloning host organism, Transformation, Transformation, Verify by recombinant clone screening, Withdraw parts from storage
Person responsible: Not available
Snapshots: No snapshots
Person responsible: Not available
Snapshots: No snapshots
Investigation: Strain engineering
Assays: No Assays
Person responsible: Not available
Snapshots: No snapshots
Investigation: Strain engineering
Assays: Automated HT spreadind using colony picker with compartementalized Qtrays, Automated recovery of transformant and distribution in appropriate format, Cell preparation from stock solution, Colony picking, Colony picking for verification of the genetic material, In vitro assembly of the DNA construct, Incubation of cells in recovery medium, Make glycerol stock for part storage, Make glycerol stock for strain storage, Order synthetic DNA, Preparation and distribution of recovery medium in microplate format, Preparation and distribution of transformation medium in microplate format, Prepare cultivation media for cultivation after colony picking, Prepare cultivation media for making glycerol stocks, Prepare cultivation media for transformation step, Prepare liquid cultivation medium for transformation, Prepare solid cultivation medium for transformation, Prepare template DNA for verification of the genetic material, Prepare transformation competent cells of the cloning host organism, Recombinant clone screening and selection (depends on transformation imp..., Select transformation conditions, Transform genetic material into cloning host organism, Transformation, Transformation, Verify by recombinant clone screening, Withdraw parts from storage
Contributor: Stefan Helfrich
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Strain engineering
Study: Transformation of production host
Organisms: No organisms
Protocols: No Protocols
Data files: No Data files
Contributor: Stefan Helfrich
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Strain engineering
Study: Transformation of production host
Organisms: No organisms
Protocols: No Protocols
Data files: No Data files
Contributor: Stefan Helfrich
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Strain engineering
Study: Transformation of production host
Organisms: No organisms
Protocols: No Protocols
Data files: No Data files
Contributor: Stefan Helfrich
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Strain engineering
Study: Transformation of production host
Organisms: No organisms
Protocols: No Protocols
Data files: No Data files
Contributor: Stefan Helfrich
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Strain engineering
Study: Transformation of production host
Organisms: No organisms
Protocols: No Protocols
Data files: No Data files
Creator: Stefan Helfrich
Contributor: Stefan Helfrich
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stefan Helfrich
Contributor: Stefan Helfrich
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stefan Helfrich
Contributor: Stefan Helfrich
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stefan Helfrich
Contributor: Stefan Helfrich
Investigations: No Investigations
Studies: No Studies
Assays: No Assays