Genetic Design (BASIC Assembly)
Version 1

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Workflow Type: Galaxy

Design plasmids encoding predicted pathways by using the BASIC assembly method.

SEEK ID: https://ibisbahub.eu/workflows/20?version=1

Inputs

ID Name Description Type
DNA-Bot settings DNA-Bot settings n/a
  • File?
Enzyme taxon IDs Enzyme taxon IDs Comma separated values
  • string?
Host taxon ID Host taxon ID n/a
  • int?
Linkers and user parts Linkers and user parts n/a
  • File
Pathway (SBML) Pathway (SBML) n/a
  • File

Steps

ID Name Description
5 Selenzyme Performs enzyme selection from a reaction query. toolshed.g2.bx.psu.edu/repos/tduigou/selenzy/selenzy-wrapper/0.2.0
6 BasicDesign Extracts enzyme IDs from rpSBML files. toolshed.g2.bx.psu.edu/repos/tduigou/rpbasicdesign/rpbasicdesign/0.3.4
7 DNA-Bot DNA assembly using BASIC on OpenTrons. toolshed.g2.bx.psu.edu/repos/tduigou/dnabot/dnabot/3.1.0

Outputs

ID Name Description Type
_anonymous_output_3 _anonymous_output_3 n/a
  • File
Uniprot IDs Uniprot IDs n/a
  • File
_anonymous_output_4 _anonymous_output_4 n/a
  • File
_anonymous_output_5 _anonymous_output_5 n/a
  • File
_anonymous_output_6 _anonymous_output_6 n/a
  • File
_anonymous_output_7 _anonymous_output_7 n/a
  • File
_anonymous_output_8 _anonymous_output_8 n/a
  • File

Version History

Version 1 (earliest) Created 1st Jun 2022 at 16:47 by Thomas Duigou

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License
Apache License 2.0
Activity

Views: 1383   Downloads: 191

Created: 1st Jun 2022 at 16:47

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