Workflow Type: Galaxy
Design plasmids encoding predicted pathways by using the BASIC assembly method.
Inputs
ID | Name | Description | Type |
---|---|---|---|
DNA-Bot settings | DNA-Bot settings | n/a |
|
Enzyme taxon IDs | Enzyme taxon IDs | Comma separated values |
|
Host taxon ID | Host taxon ID | n/a |
|
Linkers and user parts | Linkers and user parts | n/a |
|
Pathway (SBML) | Pathway (SBML) | n/a |
|
Steps
ID | Name | Description |
---|---|---|
5 | Selenzyme | Performs enzyme selection from a reaction query. toolshed.g2.bx.psu.edu/repos/tduigou/selenzy/selenzy-wrapper/0.2.0 |
6 | BasicDesign | Extracts enzyme IDs from rpSBML files. toolshed.g2.bx.psu.edu/repos/tduigou/rpbasicdesign/rpbasicdesign/0.3.4 |
7 | DNA-Bot | DNA assembly using BASIC on OpenTrons. toolshed.g2.bx.psu.edu/repos/tduigou/dnabot/dnabot/3.1.0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_3 | _anonymous_output_3 | n/a |
|
Uniprot IDs | Uniprot IDs | n/a |
|
_anonymous_output_4 | _anonymous_output_4 | n/a |
|
_anonymous_output_5 | _anonymous_output_5 | n/a |
|
_anonymous_output_6 | _anonymous_output_6 | n/a |
|
_anonymous_output_7 | _anonymous_output_7 | n/a |
|
_anonymous_output_8 | _anonymous_output_8 | n/a |
|
Version History
Version 1 (earliest) Created 1st Jun 2022 at 16:47 by Thomas Duigou
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Views: 1330 Downloads: 168
Created: 1st Jun 2022 at 16:47
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