SEEK ID: https://hub.ibisba.eu/people/6
Location:
France
Expertise: Not specified
Tools: Not specified

Related items
IBISBA is designed to accelerate end-to-end bioprocess development, linking best-in-class R&D facilities to provide seamless multi-technology services.
Focusing on the different R&D phases in bioprocess development, IBISBA offers services related to computer-assisted design of biocomponents, construction of enzymes and microbial strains, the fermentation, downstream processing and project knowledge asset management.
Projects: Uncurated Protocols Library, SULFOCEL, Template library, Muconic Acid Production in Yeast, Public announcements and documents, IBISBA Library, Curated Protocols Library, Test, DBTL-P, test
Web page: http://www.ibisba.eu
The collection of protocols that have not yet been curated by IBISBA WP6
Programme: IBISBA
Public web page: http://www.ibisba.eu
Abstract
Authors: Melchior du Lac, Thomas Duigou, Joan Hérisson, Pablo Carbonell, Neil Swainston, Valentin Zulkower, Forum Shah, Léon Faure, Mostafa Mahdy, Paul Soudier, Jean-Loup Faulon
Date Published: 15th Jun 2020
Publication Type: Journal
DOI: 10.1101/2020.06.14.145730
Citation: biorxiv;2020.06.14.145730v1,[Preprint]
Abstract (Expand)
Authors: T. Duigou, M. du Lac, P. Carbonell, J. L. Faulon
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 30321422
Citation: Nucleic Acids Res. 2019 Jan 8;47(D1):D1229-D1235. doi: 10.1093/nar/gky940.
Abstract (Expand)
Authors: B. Delepine, T. Duigou, P. Carbonell, J. L. Faulon
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 29233745
Citation: Metab Eng. 2018 Jan;45:158-170. doi: 10.1016/j.ymben.2017.12.002. Epub 2017 Dec 9.
Design plasmids encoding predicted pathways by using the BASIC assembly method.
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Download the selected SBML model fromg BiGG database.
Creator: Thomas Duigou
Submitter: Thomas Duigou
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Generate HTML outputs to explore Sensing Enabling Metabolic Pathway from RetroPath2 results.
Creator: Thomas Duigou
Submitter: Thomas Duigou
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Convert Inchi string to CSV sink file for Retropath2.0 Input.
Creator: Thomas Duigou
Submitter: Thomas Duigou
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
DNA assembly using the BASIC assembly method with Opentrons
Creator: Thomas Duigou
Submitter: Thomas Duigou
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Convert rpSBML enzyme info in to BASIC construct. UniProt IDs corresponding enzyme variants are extracted rpSBMl files. Promoters and RBSs are randomly chosen from a default list. CDSs, in other words gene variants, of enzymes are randomly chosen from amongst the UniProt IDs extracted. Constructs generated can be stored as (i) a CSV file ready to be used by DNA-Bot, (ii) as SBOL files.
Creator: Thomas Duigou
Submitter: Thomas Duigou
Investigations: No Investigations
Studies: No Studies
Assays: No Assays