Genetic Design
Download RO CrateGiven one or a collection of heterolgous pathways in SBML files, generate the SBOL for the constructs and the assembly protocols to build them
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| GEM SBML | GEM SBML | n/a |
|
| List of genetic parts | List of genetic parts | n/a |
|
| Max (UNIPROT) enzymes per reactions | Max (UNIPROT) enzymes per reactions | n/a |
|
| Top pathways to convert to SBOL | Top pathways to convert to SBOL | n/a |
|
| rpSBML TAR | rpSBML TAR | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 5 | Extract Taxonomy | extractTaxonomy |
| 6 | Selenzyme | rpSelenzyme |
| 7 | SBML to SBOL | rpSBMLtoSBOL |
| 8 | Parts Genie | PartsGenie |
| 9 | OptDoE | rpOptBioDes |
| 10 | DNA Weaver | DNAWeaver |
| 11 | LCR Genie | LCRGenie |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_6 | _anonymous_output_6 | n/a |
|
| _anonymous_output_7 | _anonymous_output_7 | n/a |
|
| _anonymous_output_8 | _anonymous_output_8 | n/a |
|
| Pathway SBOLs | Pathway SBOLs | n/a |
|
| _anonymous_output_9 | _anonymous_output_9 | n/a |
|
| _anonymous_output_10 | _anonymous_output_10 | n/a |
|
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DownloadVersion History
Version 2 (latest) Created 30th Jul 2021 at 19:01 by Melchior du Lac
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Version 1 (earliest) Created 28th Jun 2020 at 13:38 by Melchior du Lac
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Views: 799 Downloads: 11
Created: 28th Jun 2020 at 13:38
Last updated: 30th Jul 2021 at 19:01
Last used: 5th Dec 2022 at 03:15
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https://orcid.org/0000-0002-9984-4689Computational Biologist
IBISBA is designed to accelerate end-to-end bioprocess development, linking best-in-class R&D facilities to provide seamless multi-technology services.
Focusing on the different R&D phases in bioprocess development, IBISBA offers services related to computer-assisted design of biocomponents, construction of enzymes and microbial strains, the fermentation, downstream processing and project knowledge asset management.
Projects: Uncurated Protocols Library, Template library, Muconic Acid Production in Yeast, Public announcements and documents, IBISBA Library, Curated Protocols Library, Test, DBTL-P, test
Web page: http://www.ibisba.eu
The collection of protocols that have not yet been curated by IBISBA WP6
Programme: IBISBA
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