Workflow Type: Galaxy

Given one or a collection of heterolgous pathways in SBML files, generate the SBOL for the constructs and the assembly protocols to build them

Inputs

ID Name Description Type
GEM SBML GEM SBML n/a
  • File
List of genetic parts List of genetic parts n/a
  • File
Max (UNIPROT) enzymes per reactions Max (UNIPROT) enzymes per reactions n/a
  • int
Top pathways to convert to SBOL Top pathways to convert to SBOL n/a
  • int
rpSBML TAR rpSBML TAR n/a
  • File

Steps

ID Name Description
5 Extract Taxonomy extractTaxonomy
6 Selenzyme rpSelenzyme
7 SBML to SBOL rpSBMLtoSBOL
8 Parts Genie PartsGenie
9 OptDoE rpOptBioDes
10 DNA Weaver DNAWeaver
11 LCR Genie LCRGenie

Outputs

ID Name Description Type
_anonymous_output_6 _anonymous_output_6 n/a
  • File
_anonymous_output_7 _anonymous_output_7 n/a
  • File
_anonymous_output_8 _anonymous_output_8 n/a
  • File
Pathway SBOLs Pathway SBOLs n/a
  • File
_anonymous_output_9 _anonymous_output_9 n/a
  • File
_anonymous_output_10 _anonymous_output_10 n/a
  • File

Version History

Version 2 (latest) Created 30th Jul 2021 at 19:01 by Melchior du Lac

No revision comments

Version 1 (earliest) Created 28th Jun 2020 at 13:38 by Melchior du Lac

No revision comments

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Views: 799   Downloads: 11

Created: 28th Jun 2020 at 13:38

Last updated: 30th Jul 2021 at 19:01

Last used: 5th Dec 2022 at 03:15

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