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Workflow Type: Galaxy
Given one or a collection of heterolgous pathways in SBML files, generate the SBOL for the constructs and the assembly protocols to build them
Inputs
ID | Name | Description | Type |
---|---|---|---|
GEM SBML | GEM SBML | n/a |
|
List of genetic parts | List of genetic parts | n/a |
|
Max (UNIPROT) enzymes per reactions | Max (UNIPROT) enzymes per reactions | n/a |
|
Top pathways to convert to SBOL | Top pathways to convert to SBOL | n/a |
|
rpSBML TAR | rpSBML TAR | n/a |
|
Steps
ID | Name | Description |
---|---|---|
5 | Extract Taxonomy | extractTaxonomy |
6 | Selenzyme | rpSelenzyme |
7 | SBML to SBOL | rpSBMLtoSBOL |
8 | Parts Genie | PartsGenie |
9 | OptDoE | rpOptBioDes |
10 | DNA Weaver | DNAWeaver |
11 | LCR Genie | LCRGenie |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_6 | _anonymous_output_6 | n/a |
|
_anonymous_output_7 | _anonymous_output_7 | n/a |
|
_anonymous_output_8 | _anonymous_output_8 | n/a |
|
Pathway SBOLs | Pathway SBOLs | n/a |
|
_anonymous_output_9 | _anonymous_output_9 | n/a |
|
_anonymous_output_10 | _anonymous_output_10 | n/a |
|
Version History
Version 2 (latest) Created 30th Jul 2021 at 19:01 by Melchior du Lac
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Views: 2060 Downloads: 167
Created: 28th Jun 2020 at 13:38
Last updated: 30th Jul 2021 at 19:01
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