Workflow Type: Galaxy

Given a collection of SBML files with the heterologous pathways, calculate the FBA and the Gibbs free energy of the pathways.

Inputs

ID Name Description Type
GEM SBML GEM SBML n/a
  • File
Top Ranking Pathways Top Ranking Pathways n/a
  • int
rpSBML TAR rpSBML TAR n/a
  • File

Steps

ID Name Description
3 FBA rpFBA
4 Thermodynamics rpThermo
5 Rank Pathways rpGlobalScore

Outputs

ID Name Description Type
_anonymous_output_4 _anonymous_output_4 n/a
  • File
_anonymous_output_5 _anonymous_output_5 n/a
  • File
_anonymous_output_6 _anonymous_output_6 n/a
  • File

Version History

Version 2 (latest) Created 30th Jul 2021 at 18:43 by Melchior du Lac

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Version 1 (earliest) Created 28th Jun 2020 at 13:40 by Melchior du Lac

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Views: 674   Downloads: 8

Created: 28th Jun 2020 at 13:40

Last updated: 30th Jul 2021 at 18:49

Last used: 5th Dec 2022 at 03:15

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