Jasper Koehorst
SEEK ID: https://hub.ibisba.eu/people/107
Location:
Netherlands
Expertise: Data Management, Software Engineering, Genetics, Microbiology, Molecular Biology, Bioinformatics
Tools: R, Python, Java, Computational and theoretical biology, Genetic analysis
https://orcid.org/0000-0001-8172-8981 
Project roles
Asset gatekeeper
Asset housekeeper
Project administrator
Their tagsUncurated Protocols Library (WUR - Wageningen University & Research) ; Development Project (WUR - Wageningen University & Research) ; Muconic Acid Production (WUR - Wageningen University & Research) ; An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data (WUR - Wageningen University & Research) ; spreadsheet test (WUR - Wageningen University & Research) ; Example project (WUR - Wageningen University & Research) ; Template library (WUR - Wageningen University & Research)
Related items
IBISBA is designed to accelerate end-to-end bioprocess development, linking best-in-class R&D facilities to provide seamless multi-technology services.
Focusing on the different R&D phases in bioprocess development, IBISBA offers services related to computer-assisted design of biocomponents, construction of enzymes and microbial strains, the fermentation, downstream processing and project knowledge asset management.
Projects: Uncurated Protocols Library, Template library, Muconic Acid Production in Yeast, TestProjectForPopulation, Example data library, Public announcements and documents, IBISBA Library, Curated Protocols Library, Scale-up, Downstream Separation Process, Test, LCA, Process Cost Analysis, Learn, DBTL-P, Design
Web page: http://www.ibisba.eu
Files and projects to support the IBISBA 2020 f2f
Projects: An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data, PopulationTest2, Muconic Acid Development from Yeast, Muconic Acid Population Sample, Demo Project by Munazah, demo project 2
Web page: Not specified
IBISBA offers access to best-in-class facilities and know-how. Clients from academia, SMEs and big industry can find tailored solutions for their R&D needs.
Using a H2020 funding framework, IBISBA currently offers limited opportunities to researchers to obtain subsidised access to IBISBA specialised research structures and facilities, including contribution to user's travel and subsistence costs. Open Calls are launched regularly, inviting researchers from all sectors (academia and industry) ...
Projects: Development Project, TRANSCRIPTPROM - Integrative and comparative analyses of response of Pichia pastoris, FLOX: FLavin-containing OXidoreductases, PlanOvac, HIGHFLUX, SporeDel, Yeast Glycerol, Galambr, SULFOCEL, Muconic Acid Production, Promoters 4 Pichia, Evocolour - The evolution and genetics of Flavobacteria forming structurally coloured colonies for sustainable biomaterials, Extreme - Genomic approach for extremozymes screening of thermophilic/anaerobic Caldicoprobacter algerensis strain, HMOzyme, PILOT-MP - Pilot scale process development for microbial proteins, UMB - Upscaling and optimisation of microalgae production for bivalves hatchery, Biocare, MEOX, Co-culture, Yarrofuel, Plastic putida, Lipro-algae
The collection of protocols that have not yet been curated by IBISBA WP6
Programme: IBISBA
Public web page: http://www.ibisba.eu
Construction of a P. putida KT2440 producing cis,cis-muconate from glucose, benzoate, or p-coumarate
Programme: TransNational Access
Public web page: Not specified
The ecological niche occupied by a fungal species, its pathogenicity and its usefulness as a microbial cell factory to a large degree depends on its secretome. Protein secretion usually requires the presence of a N- terminal signal peptide (SP) and by scanning for this feature using available highly accurate SP-prediction tools, the fraction of potentially secreted proteins can be directly predicted. However, prediction of a SP does not guarantee that the protein is actually secreted and current ...
Programme: IBISBA 2020 f2f
Public web page: Not specified
Start date: 1st Jul 2019
End date: 31st Dec 2019
A project for templates for templates for data, protocols etc. and for their documentation and examples.
Programme: IBISBA
Public web page: Not specified
Programme: This Project is not associated with a Programme
Public web page: Not specified
Submitter: Munazah Andrabi
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Select host and product
Submitter: Munazah Andrabi
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Select host and product
Submitter: Jasper Koehorst
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: 1 hidden item
Study: 1 hidden item
The unlock metadata template using a modified version of the ISA structure.
Creator: Jasper Koehorst
Submitter: Jasper Koehorst
DownloadThis is the template that can be used to populate your project using the IBISBA Populator software that is part of the IBISBA Hub. More information can be found here https://ibisba.github.io/handbook/ibisba_hub/project/
Creator: Jasper Koehorst
Submitter: Jasper Koehorst
This is the populator file for this particular project
Creator: Jasper Koehorst
Submitter: Jasper Koehorst
Abstract (Expand)
Authors: Machtelt Braaksma, Elena S Martens-Uzunova, Peter J Punt, Peter J Schaap
Date Published: 1st Dec 2010
Publication Type: Journal
