Jasper Koehorst
SEEK ID: https://hub.ibisba.eu/people/107
Location:
Netherlands
Expertise: Data Management, Software Engineering, Genetics, Microbiology, Molecular Biology, Bioinformatics
Tools: R, Python, Java, Computational and theoretical biology, Genetic analysis
https://orcid.org/0000-0001-8172-8981 
Project roles
Asset gatekeeper
Asset housekeeper
Project administrator
Their tagsIBISBA Library (WUR - Wageningen University & Research) ; Development Project (WUR - Wageningen University & Research) ; Muconic Acid Production (WUR - Wageningen University & Research) ; An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data (WUR - Wageningen University & Research) ; spreadsheet test (WUR - Wageningen University & Research) ; Example project (WUR - Wageningen University & Research)
Related items
The ecological niche occupied by a fungal species, its pathogenicity and its usefulness as a microbial cell factory to a large degree depends on its secretome. Protein secretion usually requires the presence of a N- terminal signal peptide (SP) and by scanning for this feature using available highly accurate SP-prediction tools, the fraction of potentially secreted proteins can be directly predicted.
However, prediction of a SP does not guarantee that the protein is actually secreted and current
...
Programme: TransNational Access
Public web page: Not specified
Start date: 1st Jul 2019
End date: 31st Dec 2019
Programme: This Project is not associated with a Programme
Public web page: Not specified
Programme: This Project is not associated with a Programme
Public web page: Not specified
Construction of a P. putida KT2440 producing cis,cis-muconate from glucose, benzoate, or p-coumarate
Programme: TransNational Access
Public web page: Not specified
Construction of a P. putida KT2440 producing cis,cis-muconate from glucose, benzoate, or p-coumarate
Contributor: Jasper Koehorst
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
This is the template that can be used to populate your project using the IBISBA Populator software that is part of the IBISBA Hub. More information can be found here https://ibisba.github.io/handbook/ibisba_hub/project/
Creator: Jasper Koehorst
Contributor: Jasper Koehorst
DownloadThis is the populator file for this particular project
Creator: Jasper Koehorst
Contributor: Jasper Koehorst
Abstract (Expand)
Authors: Machtelt Braaksma, Elena S Martens-Uzunova, Peter J Punt, Peter J Schaap
Date Published: 1st Dec 2010
Publication Type: Journal
