Jasper Koehorst
SEEK ID: https://hub.ibisba.eu/people/107
Location:
Netherlands
Expertise: Data Management, Software Engineering, Genetics, Microbiology, Molecular Biology, Bioinformatics
Tools: R, Python, Java, Computational and theoretical biology, Genetic analysis
https://orcid.org/0000-0001-8172-8981 
Project roles
Asset gatekeeper
Asset housekeeper
Project administrator
Their tagsUncurated Protocols Library (WUR - Wageningen University & Research) ; Development Project (WUR - Wageningen University & Research) ; Muconic Acid Production (WUR - Wageningen University & Research) ; An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data (WUR - Wageningen University & Research) ; spreadsheet test (WUR - Wageningen University & Research) ; Example project (WUR - Wageningen University & Research) ; Template library (WUR - Wageningen University & Research)
Related items
Construction of a P. putida KT2440 producing cis,cis-muconate from glucose, benzoate, or p-coumarate
Programme: TransNational Access
Public web page: Not specified
The collection of protocols that have not yet been curated by IBISBA WP6
Programme: IBISBA
Public web page: http://www.ibisba.eu
The ecological niche occupied by a fungal species, its pathogenicity and its usefulness as a microbial cell factory to a large degree depends on its secretome. Protein secretion usually requires the presence of a N- terminal signal peptide (SP) and by scanning for this feature using available highly accurate SP-prediction tools, the fraction of potentially secreted proteins can be directly predicted.
However, prediction of a SP does not guarantee that the protein is actually secreted and current
...
Programme: IBISBA 2020 f2f
Public web page: Not specified
Start date: 1st Jul 2019
End date: 31st Dec 2019
A project for templates for templates for data, protocols etc. and for their documentation and examples.
Programme: IBISBA
Public web page: Not specified
Programme: This Project is not associated with a Programme
Public web page: Not specified
Contributor: Munazah Andrabi
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Contributor: Munazah Andrabi
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Contributor: Jasper Koehorst
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
The unlock metadata template using a modified version of the ISA structure.
Creator: Jasper Koehorst
Contributor: Jasper Koehorst
DownloadThis is the template that can be used to populate your project using the IBISBA Populator software that is part of the IBISBA Hub. More information can be found here https://ibisba.github.io/handbook/ibisba_hub/project/
Creator: Jasper Koehorst
Contributor: Jasper Koehorst
This is the populator file for this particular project
Creator: Jasper Koehorst
Contributor: Jasper Koehorst
Abstract (Expand)
Authors: Machtelt Braaksma, Elena S Martens-Uzunova, Peter J Punt, Peter J Schaap
Date Published: 1st Dec 2010
Publication Type: Journal
