Technology type &#39;Technology Type&#39;

Withdraw parts from storage

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

In vitro assembly of the DNA construct

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare transformation competent cells of the cloning host organism

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare liquid cultivation medium for transformation

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare solid cultivation medium for transformation

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare cultivation media for making glycerol stocks

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Transform genetic material into cloning host organism

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Colony picking for verification of the genetic material

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare template DNA for verification of the genetic material

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Make glycerol stock for part storage

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare cultivation media for transformation step

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare cultivation media for cultivation after colony picking

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

Colony picking

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Preparation and distribution of transformation medium in microplate format

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Preparation and distribution of recovery medium in microplate format

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Cell preparation from stock solution

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Select transformation conditions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Incubation of cells in recovery medium

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Automated HT spreadind using colony picker with compartementalized Qtrays

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Automated recovery of transformant and distribution in appropriate format

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Recombinant clone screening and selection (depends on transformation implementation)

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Make glycerol stock for strain storage

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

TestProjectForPopulation

No description specified

Submitter: IBISBA Admin

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 15:15

Order synthetic DNA

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Withdraw parts from storage

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

In vitro assembly of the DNA construct

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare transformation competent cells of the cloning host organism

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare liquid cultivation medium for transformation

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare solid cultivation medium for transformation

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare cultivation media for making glycerol stocks

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Transform genetic material into cloning host organism

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Colony picking for verification of the genetic material

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare template DNA for verification of the genetic material

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Make glycerol stock for part storage

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare cultivation media for transformation step

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare cultivation media for cultivation after colony picking

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

Colony picking

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Preparation and distribution of transformation medium in microplate format

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Preparation and distribution of recovery medium in microplate format

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Cell preparation from stock solution

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Select transformation conditions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Incubation of cells in recovery medium

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Automated HT spreadind using colony picker with compartementalized Qtrays

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Automated recovery of transformant and distribution in appropriate format

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Recombinant clone screening and selection (depends on transformation implementation)

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Make glycerol stock for strain storage

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

PopulationTest2

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Deposit Strain to Storage

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 2nd Jul 2020 at 16:50

Strain Revitalization

Muconic Acid Development from Yeast

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain Management for Yeast

Study: Strain Transfer for Yeast

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 5th Jul 2020 at 14:48

Muconic Acid Development from Yeast

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain Management for Yeast

Study: Strain Transfer for Yeast

Organisms: Saccharomyces cerevisiae : CEN.PK113-7D (wild-type / wild-type)

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 5th Jul 2020 at 14:51

Prepare transformation of competent cells

Muconic Acid Development from Yeast

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain Engineering for Yeast

Study: Assemble Parts

Organisms: Saccharomyces cerevisiae

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 5th Jul 2020 at 15:01

Colony Picking for verification of Genetic Material

Muconic Acid Development from Yeast

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain Engineering for Yeast

Study: Assemble Parts

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 5th Jul 2020 at 15:02

Prepare Genetic material for Transformation

Muconic Acid Development from Yeast

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain Engineering for Yeast

Study: Assemble Parts

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 5th Jul 2020 at 15:03

Muconic Acid Development from Yeast

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain Engineering for Yeast

Transformation and Colony Picking

Organisms: No organisms

Protocols: No Protocols

Data files: 1 hidden item

Snapshots: No snapshots

Created: 5th Jul 2020 at 15:06, Last updated: 5th Jul 2020 at 20:21

Muconic Acid Development from Yeast

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain Engineering for Yeast

Recombinant Clone Screening and Selection

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 5th Jul 2020 at 15:08, Last updated: 5th Jul 2020 at 18:10

Muconic Acid Development from Yeast

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain Engineering for Yeast

Obtain annotated genome for production host

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 5th Jul 2020 at 15:10

Procure Synthetic DNA

Muconic Acid Development from Yeast

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain Engineering for Yeast

Study: Assemble Parts

Organisms: Saccharomyces cerevisiae

Protocols: No Protocols

Data files: Synthetic DNA Construct

Snapshots: No snapshots

Created: 5th Jul 2020 at 16:37, Last updated: 5th Jul 2020 at 19:27

Muconic Acid Population Sample

Proper description.

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Study: Metabolic strain design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 6th Jul 2020 at 15:04, Last updated: 6th Jul 2020 at 15:04

Measure uptake kinetics

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Study: Metabolic strain design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 6th Jul 2020 at 15:04

Estimate market cost of substrate

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Study: Metabolic strain design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 6th Jul 2020 at 15:04

Estimate toxicity for host

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Study: Metabolic strain design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 6th Jul 2020 at 15:04

Change medium

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Study: Metabolic strain design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 6th Jul 2020 at 15:04

Change temperature

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Study: Metabolic strain design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 6th Jul 2020 at 15:04

Order synthetic DNA

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Withdraw parts from storage

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

In vitro assembly of the DNA construct

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare transformation competent cells of the cloning host organism

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare liquid cultivation medium for transformation

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare solid cultivation medium for transformation

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare cultivation media for making glycerol stocks

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Transform genetic material into cloning host organism

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Colony picking for verification of the genetic material

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare template DNA for verification of the genetic material

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Make glycerol stock for part storage

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare cultivation media for transformation step

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Prepare cultivation media for cultivation after colony picking

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Colony picking

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Preparation and distribution of transformation medium in microplate format

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Preparation and distribution of recovery medium in microplate format

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Cell preparation from stock solution

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Select transformation conditions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Incubation of cells in recovery medium

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Automated HT spreadind using colony picker with compartementalized Qtrays

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Automated recovery of transformant and distribution in appropriate format

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Recombinant clone screening and selection (depends on transformation implementation)

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Make glycerol stock for strain storage

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Muconic Acid Population Sample

No description specified

Submitter: Stefan Helfrich

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Strain engineering

Data collection on mass and energy balances, chemical and physical equilibria

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 20th Aug 2020 at 11:17

Scale-up

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 10th Dec 2020 at 18:26

Downstream processing

Downstream Separation Process

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess synthesis

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 11th Dec 2020 at 18:27

Pathway improvement by mutations

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Computationally choose genome regions to delete

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Calculate process variables

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Data processing

Study: Calculation of process variables

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

Conceptual and unit and process representation

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

Superstructure modeling and optimization

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

Data collection on mass and energy balances, chemical and physical equilibria

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

Modeling of unit processes (reactions, separations recycles)

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

Process flowsheeting (process integration and recycles)

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

Upstream operations

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess synthesis

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

Downstream processing

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess synthesis

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

Energy integration

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess Integration

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

Material and water integration

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess Integration

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:43

Pathway improvement by mutations

Design

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Computationally choose genome regions to delete

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:44

Design

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Conceptual and unit and process representation

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:44

Learn

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:46

Superstructure modeling and optimization

Learn

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:46

Data collection on mass and energy balances, chemical and physical equilibria

Learn

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:46

Modeling of unit processes (reactions, separations recycles)

Learn

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:46

Process flowsheeting (process integration and recycles)

Learn

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:46

Calculate process variables

Test

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Data processing

Study: Calculation of process variables

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 16:49

Obtain proteomes

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Understanding the extracellular environment in ...

Study: In silico prediction

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:01

Signal peptide predictions

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Understanding the extracellular environment in ...

Study: In silico prediction

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:01

Orthology identification

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Understanding the extracellular environment in ...

Study: In silico prediction

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:01

GPI Anchor predictions

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Understanding the extracellular environment in ...

Study: In silico prediction

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:01

growth experiment

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Understanding the extracellular environment in ...

Study: Culture experiments

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:01

Liquid chromatography tandem mass spectrometric

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Understanding the extracellular environment in ...

Study: Culture experiments

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:01

MS analysis

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Understanding the extracellular environment in ...

Study: Validation of the secretome of A. niger

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:01

Identify enzymes from specta

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Understanding the extracellular environment in ...

Study: Metabolic model analysis

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:01

Obtain physicochemical data (Toxicity, Solubility, InChI,…) for product

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Genome sequence

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Genome-scale metabolic model (GEM)

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Collect relevant available (bibliographic, experimental) data (candidate ‘sink’ metabolites)

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Raw material requirements

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Oxygen requirements

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Study: Physiological constraints

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Study: Physiological constraints

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Estimate market value of product

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Study: Physiological constraints

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Intellectual Property (IP) constraints

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

DSP considerations

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Receive name of production host

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Receive input from "select host and products" step

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Obtain SBML models for production hosts

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Receive input from "select host and products" step

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Obtain annotated genomes of production hosts

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Receive input from "select host and products" step

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Receive name of product

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Receive input from "select host and products" step

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Physiological constraints

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Receive input from #Upscale #Test-HighThroughpu...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Process constraints.

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Receive input from #Upscale #Test-HighThroughpu...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Freedom to operate (IPR considerations)

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Information search

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Known pathways in literature

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Information search

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Known pathways in reaction databases

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Information search

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Patent search

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Information search

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Enumerate pathway options (Retropath,…)

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Screen pathway options based on quality criteria

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Convert reaction rules to complete reactions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Score pathways without chassis

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Membrane toxicity of intermediates

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Thermodynamic feasibility verification

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Optimized Bottleneck Energetics

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Receive input from product pathway design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Chassis embedment

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Map metabolites between pathway and chassis

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Chassis embedment

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Add production pathway to chassis SBML in silico

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Chassis embedment

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Fill metabolic gaps

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Chassis embedment

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Screen potential substrates in silico

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Chassis embedment

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Screen growth conditions

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Chassis embedment

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Growth-product coupling. (e.g. OptKnock, RobustKnock, Minimal Cut Sets)

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Chassis embedment

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Calculate expected yields

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Chassis embedment

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Estimate productivities

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Chassis embedment

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Perform evaluation

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Evaluate and choose pathways

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Check for native enzymes with activity for heterologous metabolites

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Genome reannotation

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Search for native homologues of enzymes acting on the heterologous metabolites

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Additional trait design

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Propose desirable traits

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Bioprospecting for traits

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Pathway improvement by mutations, supporting/auxiliary pathways, enzymes/cofactor specificity, genetic modifications

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Select promoter types

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Evaluate and choose strains

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Describe genetic constructs in SBOL format

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Store the list of enzyme functions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Store the list of gene additions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Store the list of gene deletions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Store the list of genotypes

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Store the list of promoter types

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Retrieve the list of enzyme functions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Generate candidate sequences (Enzyme search)

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Function-based in silico screening of candidate sequences

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Choose enzyme sequences

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Optimize gene sequences

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Remove mobile regulatory elements

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Send list of gene additions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Freedom to operate with regards to the tools #IPRConsiderations

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Design DNA constructs for expression host

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

List DNA fragments to order

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Design DNA constructs for expression host

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Describe genetic constructs in SBOL format

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Design DNA constructs for expression host

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Send strain designs to Build

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Retrieve the list of gene deletions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Retrieve the list of gene additions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Retrieve the list of promoter types

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Select promoters

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Select integration sites/loci

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

CRISPR/Cas9

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

MAGE: genome engineering

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Select vectors/plasmids/DNA constructs

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Select vector assembly strategy

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

SEVA/METABRICK, Moclo, Gibson pathway engineering @Wageningen

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Vector, promoter selection, plasmids, locus of integration, restriction sites, etc (cloning strategy)

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Select primers for vector assembly

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Combinatorial assembly strategy

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Receive list of genotypes

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Design growth medium and cultivation conditions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Design experiments to test phenotype

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Design growth medium and cultivation conditions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Send list of growth media and cultivation conditions to Test

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Design growth medium and cultivation conditions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Send predicted clone behavior to Test

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Design growth medium and cultivation conditions

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Calculation of theoretical yields/productivities carried out

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Criteria for successful outcome of #Design (Cri...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Appropriate MTAs and other agreements in place

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Criteria for successful outcome of #Design (Cri...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Consideration to the specificity of the process (for the product) (selectivity, side products)

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Criteria for successful outcome of #Design (Cri...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Design suits the chassis (and its genotype)

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Criteria for successful outcome of #Design (Cri...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Design expected to be stable in vivo

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Criteria for successful outcome of #Design (Cri...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Build designs made #Output

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Criteria for successful outcome of #Design (Cri...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Test conditions designed

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Criteria for successful outcome of #Design (Cri...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Upscale conditions considered #UpscaleConsideration

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Criteria for successful outcome of #Design (Cri...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Test conditions considered and predicted strain behavior expected to be measureable in #Test-HighThroughput conditions

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Criteria for successful outcome of #Design (Cri...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Predicted effect of modifications on flux ratios expected to be measurable in Test conditions (e.g. product and/or precursor).

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Criteria for successful outcome of #Design (Cri...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Send output to build

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Design

Study: Output to Build

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Receive high-level step-by-step instructions for construction of DNA constructs

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Study: Receive input from Design: strain and vector de...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Receive plasmid maps in SBOL format

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Study: Receive input from Design: strain and vector de...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Receive list of oligos in FASTA format to be ordered for DNA fragment constrution

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Study: Receive input from Design: strain and vector de...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Receive high-level step-by-step instructions for strain construction

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Study: Receive input from Design: strain and vector de...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Receive list of primers in FASTA format for verification and the SOP of the verification method

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Study: Receive input from Design: strain and vector de...

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Order/synthesize genetic material

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Receive genetic material

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Transformation of the genetic material into the cloning host organism

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Prepare transformation competent cells of the cloning host organism

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Prepare genetic material for transformation

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Prepare liquid cultivation medium for transformation

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Prepare solid cultivation medium for transformation

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

Demo Project by Munazah

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Build

Obtain physicochemical data (Toxicity, Solubility, InChI,…) for product

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 13:07

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 14:11

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 14:11

Genome sequence

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Genome-scale metabolic model (GEM)

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 14:11

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Collect relevant available (bibliographic, experimental) data (candidate ‘sink’ metabolites)

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 14:11

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Raw material requirements

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 14:11

Oxygen requirements

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Study: Physiological constraints

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 14:11

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Study: Physiological constraints

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 14:11

Estimate market value of product

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Study: Physiological constraints

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 14:11

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Intellectual Property (IP) constraints

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 14:11

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product

Organisms: No organisms

Protocols: No Protocols

Data files: No Data files

Snapshots: No snapshots

Created: 25th Mar 2021 at 14:11

DSP considerations

demo project 2

No description specified

Submitter: Munazah Andrabi

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Select host and product